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Run GenomeTester4 binaries with processx

gt4_run.Rd

Thin wrappers around executables bundled in inst/bin.

Usage

gt4_run(binary, args = character(), ...)

gmer_counter(args = character(), ...)

glistcompare(args = character(), ...)

glistmaker(args = character(), ...)

glistquery(args = character(), ...)

gassembler(args = character(), ...)

gmer_caller(args = character(), ...)

Arguments

binary

Name of the GenomeTester4 executable.

args

Character vector of command line arguments.

...

Additional arguments passed to processx::run().

Value

A list from processx::run() with process results.

Examples

if (FALSE) { # \dontrun{
gt4_run("glistquery", c("--help"), error_on_status = FALSE)
} # }
if (FALSE) { # \dontrun{
gmer_counter(c("--help"), error_on_status = FALSE)
} # }
if (FALSE) { # \dontrun{
glistcompare(c("--help"), error_on_status = FALSE)
} # }
if (FALSE) { # \dontrun{
glistmaker(c("--help"), error_on_status = FALSE)
} # }
if (FALSE) { # \dontrun{
glistquery(c("--help"), error_on_status = FALSE)
} # }
if (FALSE) { # \dontrun{
gassembler(c("--help"), error_on_status = FALSE)
} # }
if (FALSE) { # \dontrun{
gmer_caller(c("--help"), error_on_status = FALSE)
} # }