Build a sample k-mer list for NIPTmer

Thin wrapper around glistmaker for the FASTQ -> sample list step used by the legacy NIPTmer pipeline. When multiple FASTQ files are supplied, they are concatenated internally before glistmaker runs so paired inputs follow the same contract as the shell workflow.

Usage

niptmer_make_sample_list(fastq_files, out_prefix, k = 25, threads = 1)

Arguments

fastq_files

One or more FASTQ file paths. When length(fastq_files) > 1, the files are concatenated internally before list generation.

out_prefix

Output prefix passed to glistmaker -o.

k

Word length.

threads

Number of threads.

Value

Normalized path to the generated .list file.