Build a BED-region blacklist

Build a BED-region blacklist

Usage

niptmer_ref_blacklist_from_bed(
  genome_fasta,
  bed_files,
  k = 25,
  out_prefix = "pop_cnv_blacklist",
  out_dir = "."
)

Arguments

genome_fasta

FASTA path containing genome sequences.

bed_files

Character vector of BED file paths.

k

K-mer size.

out_prefix

Output prefix for the produced list.

out_dir

Output directory.

Value

A list with output path and sequence count used for the blacklist.