Correct gonosomal read counts for male samples

Doubles chrX (key "23") and chrY (key "24") counts for male samples to level with autosomal diploid coverage. This is a no-op for female samples. Mirrors overall_tools.gender_correct() in upstream WisecondorX.

Usage

.gender_correct(sample, gender)

Arguments

sample

Named list of integer/numeric vectors keyed by chromosome.

gender

Character; "M" for male, "F" for female.

Value

Modified sample with doubled chrX/Y if male.