Build a minibwa index through the CLI — minibwa_index • Rminibwa

Build a minibwa index through the CLI

Usage

minibwa_index(
  reference,
  prefix = NULL,
  threads = NULL,
  meth = FALSE,
  low_memory = FALSE,
  extra_args = character(),
  path = minibwa_path()
)

Arguments

reference: Path to a FASTA reference.
prefix: Optional output prefix. When NULL, minibwa uses reference as the prefix.
threads: Optional number of worker threads.
meth: If TRUE, build a directional bisulfite sequencing index via --meth.
low_memory: If TRUE, pass -l to minibwa index.
extra_args: Additional CLI arguments inserted before positional arguments.
path: Executable name or path.

Value

Invisibly, the expected index prefix.